Sesamum indicum Genetic Discovery Database (SiGeDiD)

BIOINFORMATICS

Sesamum indicum Genetic Discovery Database (SiGeDiD)

Note: Funtional genes

Number of functional genes :59

Num	ID	LG	Start(bp)	End(bp)	Trait	Gene predicted function	Category
1	SIN_1009480	1	11324118	11326240	Susceptibility of Phyllody Disease	leucine-rich repeat (LRR) protein kinase family protein	Wei et al., 2015
2	SIN_1010870	1	13334907	13340140	Sesamin	De-Etiolated 3 (DET3), involved in lignin biosynthetic process	Wei et al., 2015
3	SIN_1010897	1	13596496	13596945	Susceptibility of Phyllody Disease	DUF538, bactericidal/permeability-increasing protein	Wei et al., 2015
4	SIN_1010931	1	13854919	13857158	Oil Content	lipid-transfer protein (LTP)	Wei et al., 2015
5	SIN_1003248	1	14690208	14691263	Oil Content	carboxyesterase 17 (CXE17), Lipase	Wei et al., 2015
6	SIN_1017074	2	1522129	1534867	Resistance of Macrophomina Phaseoli	leucine-rich repeat (LRR) protein kinase family protein	Wei et al., 2015
7	SIN_1017036	2	2015970	2018240	Susceptibility of Phyllody Disease	glutathione S-transferase PHI 9 (GSTF9), involved in defense response to bacterium	Wei et al., 2015
8	SIN_1017003	2	2415948	2418123	Full Flowering Date	GF14, 14-3-3 protein	Wei et al., 2015
9	SIN_1023837	2	10122700	10123725	Full Flowering Date	indole-3-acetic acid inducible 33 (IAA33)	Wei et al., 2015
10	SIN_1018135	2	17570612	17573789	Plant Height	IAA-leucine resistant 1 (ILR1), Involved in auxin metabolic process	Wei et al., 2015
11	SIN_1021891	3	14323830	14326954	TAG biosynthesis	PDCT/ROD1	Wang et al., 2014
12	SIN_1022131	3	12326728	12329612	TAG biosynthesis	Steroleosin	Wang et al., 2014
13	SIN_1022133	3	12305076	12309866	C20:1	fatty acyl-ACP thioesterases B (FATB)	Wei et al., 2015
14	SIN_1021838	3	14959988	14962007	Full Flowering Date	indole-3-acetic acid inducible 14 (IAA14)	Wei et al., 2015
15	SIN_1015799	3	19797151	19808055	Full Flowering Date	GIGANTEA (GI)	Wei et al., 2015
16	SIN_1008977	3	24107564	24109077	C18:1/C18:2	stearoyl-acyl-carrier-protein desaturase (SAD)	Wei et al., 2015
17	SIN_1012139	4	12616515	12617537	TAG biosynthesis	ABI4	Wang et al., 2014
18	SIN_1016733	4	11424951	11425625	TAG biosynthesis	Oil-Body Oleosin	Wang et al., 2014
19	SIN_1016759	4	11607538	11609334	Seed Color	polyphenol oxidase (PPO)	Wei et al., 2015; 2016
20	SIN_1007062	4	16066847	16072708	Life Cycle Period	early flowering 9 (ELF9)	Wei et al., 2015
21	SIN_1005540	5	724779	725937	TAG biosynthesis	Oil-Body Oleosin	Wang et al., 2014
22	SIN_1005440	5	56966	64367	C18:0	Acyl-CoA N-acyltransferase (ACNA), involved in fatty acid biosynthetic process	Wei et al., 2015
23	SIN_1003867	5	1379688	1383494	SFA	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (CAC3)	Wei et al., 2015
24	SIN_1007671	5	3094410	3099920	C18:0	histone acetyltransferase of the GNAT family 2 (HAG2), Acyl-CoA N-acyltransferase(ACNA)	Wei et al., 2015
25	SIN_1007554	5	4053716	4061641	Oil Content	3-ketoacyl-acyl carrier protein synthase II (KASII)	Wei et al., 2015
26	SIN_1006338	5	6736880	6739189	Capsule Number per Axil	1-amino-cyclopropane-1-carboxylate synthase 8 (ACS8)	Wei et al., 2015
27	SIN_1023555	5	12870701	12876971	Susceptibility of Phyllody Disease	leucine-rich repeat (LRR) protein kinase family protein	Wei et al., 2015
28	SIN_1011796	5	17536090	17537741	Full Flowering Date	CONSTANS-like 5 (COL5)	Wei et al., 2015
29	SIN_1009752	6	3007306	3010075	TAG biosynthesis	ABI3	Wang et al., 2014
30	SIN_1015471	6	7826213	7826740	sesamin production	DIR	Wang et al., 2014
31	SIN_1009785	6	3251390	3254952	C18:1	fatty acid desaturase 2 (FAD2)	Wei et al., 2015
32	SIN_1009836	6	3692761	3696535	SFA	lipoxygenase 3 (LOX3)	Wei et al., 2015
33	SIN_1015527	6	8271936	8275066	Flower Lip Color	GLABROUS 3 (GL3)	Wei et al., 2015
34	SIN_1022538	6	22011308	22012441	Full Flowering Date	delay of germination 1 (DOG1), influence germination and flowering time	Wei et al., 2015
35	SIN_1007270	7	6133441	6137719	Full Flowering Date	KNOTTED1-like homeobox gene 4 (KNAT4), involved in response to light stimulus	Wei et al., 2015
36	SIN_1019747	8	1661953	1670303	Seed Number per Capsule	phytochrome C (PHYC)	Wei et al., 2015
37	SIN_1005989	8	15096112	15104658	Maturation Period	timing of cab expression 1 (TOC1)	Wei et al., 2015
38	SIN_1010510	9	290264	294507	TAG biosynthesis	PDAT1	Wang et al., 2014
39	SIN_1010473	9	47381	48855	Corolla Color	myb domain protein 36 (MYB36)	Wei et al., 2015
40	SIN_1024378	9	3604964	3619864	Susceptibility of Phyllody Disease	leucine-rich repeat (LRR) protein kinase family protein	Wei et al., 2015
41	SIN_1024296	9	4169439	4177042	C18:0	Acyl-ACP thioesterase (FATA)	Wei et al., 2015
42	SIN_1002815	10	276564	2763889	TAG biosynthesis	Caleosin	Wang et al., 2014
43	SIN_1017733	10	8410367	8416203	TAG biosynthesis	WRI1	Wang et al., 2014
44	SIN_1019167	10	5511225	5511706	Oil Content	lipid transfer protein 4 (LTP4)	Wei et al., 2015
45	SIN_1005755	11	133877	135812	Sesamin	NAC secondary wall thickening promoting factor1 (NST1)	Wei et al., 2015
46	SIN_1009923	11	1460089	1465876	Oil Content	lipid/sterol-binding StAR-related lipid transfer (START) protein	Wei et al., 2015
47	SIN_1024652	11	9491668	9497209	C16:0/C16:1,	3-ketoacyl-acyl carrier protein synthase II (KASII)	Wei et al., 2015
48	SIN_1013005	11	11749781	11754409	Oil Content	GDSL-like Lipase	Wei et al., 2015
49	SIN_1013020	11	11657830	11659532	Initiate Flowering Date	ABA insensitive 5 (ABI5)	Wei et al., 2015
50	SIN_1014512	12	323049	325137	Plant Height	dwarf in light 1 (DFL1)	Wei et al., 2015
51	SIN_1001803	12	5020730	5024213	C16:0	3-ketoacyl-acyl carrier protein synthase I (KASI)	Wei et al., 2015
52	SIN_1019256	14	2159905	2166799	SFA	diacylglycerol acyltransferase (DGAT2)	Wei et al., 2015
53	SIN_1007879	15	98885	99385	TAG biosynthesis	Oil-Body Oleosin	Wang et al., 2014
54	SIN_1025734	15	3765170	3766860	sesamin production	P450	Wang et al., 2014
55	SIN_1004921	15	2332640	2333600	Petiole Color	myb domain protein 121 (MYB121)	Wei et al., 2015
56	SIN_1025617	15	4731383	4735070	Petiole Color	myb domain protein 113 (MYB113)	Wei et al., 2015
57	SIN_1017183	16	2594355	2595732	Full Flowering Date	auxin-responsive factor	Wei et al., 2015
58	SIN_1007213	16	3020135	3030748	Oil Content	lipid-transfer protein (LTP)	Wei et al., 2015
59	SIN_1010554	9	649613	651421	Susceptibility of Phyllody Disease	Terminal flower like protein	Zhang et al, 2016

Adresse: UCAD-Senegal SiGeDiD-Sesame 2018 -- Copyright Mai 2018 -- Admin: Idrissa navel DIALLO(idrissanaveldiallo65@gmail.com)